| # | Passing Yards | Name | Season |
| 1 | 4,385 | Geno Smith | 2011 |
| 2 | 4,205 | Geno Smith | 2012 |
| 3 | 3,864 | Will Grier | 2018 |
| 4 | 3,607 | Marc Bulger | 1998 |
| 5 | 3,490 | Will Grier | 2017 |
| 6 | 3,328 | Skyler Howard | 2016 |
| 7 | 3,285 | Clint Trickett | 2014 |
| 8 | 3,145 | Skyler Howard | 2015 |
| 9 | 3,048 | Jarret Doege | 2021 |
| 10 | 2,763 | Geno Smith | 2010 |
| 11 | 2,587 | Jarret Doege | 2020 |
| 12 | 2,486 | Bernie Galiffa | 1972 |
| 13 | 2,465 | Marc Bulger | 1997 |
| 14 | 2,448 | Oliver Luck | 1981 |
| 15 | 2,406 | Garrett Greene | 2023 |
| 16 | 2,335 | Jeff Hostetler | 1983 |
| 17 | 2,144 | Jarrett Brown | 2009 |
| 18 | 2,107 | J.T. Daniels | 2022 |
| 19 | 2,058 | Major Harris | 1989 |
| 20 | 2,019 | Chad Johnston | 1995 |
| 21 | 1,998 | Mike Sherwood | 1968 |
| 22 | 1,989 | Austin Kendall | 2019 |
| 23 | 1,958 | Chad Johnston | 1996 |
| 24 | 1,916 | Jeff Hostetler | 1982 |
| 25 | 1,915 | Major Harris | 1988 |
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